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PAnalyzer: A software tool for protein inference in shotgun proteomics
Prieto Agujeta, Gorka 
; Aloria Escolastico, Kerman; Osinalde Moraleja, Nerea ; Fullaondo Elordui-Zapaterieche, Asier ; Arizmendi Bastarrika, Jesús María ; Matthiesen, Rune (BioMed Central, 2012-11-05)
; Aloria Escolastico, Kerman; Osinalde Moraleja, Nerea ; Fullaondo Elordui-Zapaterieche, Asier ; Arizmendi Bastarrika, Jesús María ; Matthiesen, Rune (BioMed Central, 2012-11-05)
Background
Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. ...