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dc.contributor.authorEgaña Aranguren, Mikel
dc.contributor.authorRodríguez González, Alejandro
dc.contributor.authorWilkinson, Mark D.
dc.date.accessioned2015-10-27T13:30:37Z
dc.date.available2015-10-27T13:30:37Z
dc.date.issued2014-09-22
dc.identifier.citationJournal of Biomedical Semantics 5 : (2014) // Article ID 42es
dc.identifier.issn2041-1480
dc.identifier.urihttp://hdl.handle.net/10810/15997
dc.description.abstractBackground: In recent years Galaxy has become a popular workflow management system in bioinformatics, due to its ease of installation, use and extension. The availability of Semantic Web-oriented tools in Galaxy, however, is limited. This is also the case for Semantic Web Services such as those provided by the SADI project, i.e. services that consume and produce RDF. Here we present SADI-Galaxy, a tool generator that deploys selected SADI Services as typical Galaxy tools. Results: SADI-Galaxy is a Galaxy tool generator: through SADI-Galaxy, any SADI-compliant service becomes a Galaxy tool that can participate in other out-standing features of Galaxy such as data storage, history, workflow creation, and publication. Galaxy can also be used to execute and combine SADI services as it does with other Galaxy tools. Finally, we have semi-automated the packing and unpacking of data into RDF such that other Galaxy tools can easily be combined with SADI services, plugging the rich SADI Semantic Web Service environment into the popular Galaxy ecosystem. Conclusions: SADI-Galaxy bridges the gap between Galaxy, an easy to use but "static" workflow system with a wide user-base, and SADI, a sophisticated, semantic, discovery-based framework for Web Services, thus benefiting both user communities.es
dc.description.sponsorshipMikel Egana Aranguren is funded by the Marie Curie Cofund programme (FP7) of the European Union and the Genomic Resources Group of the University of Basque Country. Alejandro Rodriguez Gonzalez and Mark D. Wilkinson are funded by the Isaac Peral Programme of the CBGP-UPM.es
dc.language.isoenges
dc.publisherBiomed Centrales
dc.rightsinfo:eu-repo/semantics/openAccesses
dc.subjectgalaxyes
dc.subjectweb serviceses
dc.subjectSADIes
dc.subjectRDFes
dc.subjectSPARQLes
dc.subjectOWLes
dc.subjectlife scienceses
dc.subjectgeneses
dc.titleExecuting SADI services in Galaxyes
dc.typeinfo:eu-repo/semantics/articlees
dc.rights.holder© 2014 Egaña Aranguren et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.es
dc.relation.publisherversionhttp://www.jbiomedsem.com/content/5/1/42/abstractes
dc.identifier.doi10.1186/2041-1480-5-42
dc.departamentoesGenética, antropología física y fisiología animales_ES
dc.departamentoeuGenetika,antropologia fisikoa eta animalien fisiologiaes_ES


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