| dc.contributor.author | Egaña Aranguren, Mikel  | |
| dc.contributor.author | Rodríguez González, Alejandro | |
| dc.contributor.author | Wilkinson, Mark D. | |
| dc.date.accessioned | 2015-10-27T13:30:37Z | |
| dc.date.available | 2015-10-27T13:30:37Z | |
| dc.date.issued | 2014-09-22 | |
| dc.identifier.citation | Journal of Biomedical Semantics 5 : (2014) // Article ID 42 | es |
| dc.identifier.issn | 2041-1480 | |
| dc.identifier.uri | http://hdl.handle.net/10810/15997 | |
| dc.description.abstract | Background: In recent years Galaxy has become a popular workflow management system in bioinformatics, due to its ease of installation, use and extension. The availability of Semantic Web-oriented tools in Galaxy, however, is limited. This is also the case for Semantic Web Services such as those provided by the SADI project, i.e. services that consume and produce RDF. Here we present SADI-Galaxy, a tool generator that deploys selected SADI Services as typical Galaxy tools.
Results: SADI-Galaxy is a Galaxy tool generator: through SADI-Galaxy, any SADI-compliant service becomes a Galaxy tool that can participate in other out-standing features of Galaxy such as data storage, history, workflow creation, and publication. Galaxy can also be used to execute and combine SADI services as it does with other Galaxy tools. Finally, we have semi-automated the packing and unpacking of data into RDF such that other Galaxy tools can easily be combined with SADI services, plugging the rich SADI Semantic Web Service environment into the popular Galaxy ecosystem.
Conclusions: SADI-Galaxy bridges the gap between Galaxy, an easy to use but "static" workflow system with a wide user-base, and SADI, a sophisticated, semantic, discovery-based framework for Web Services, thus benefiting both user communities. | es |
| dc.description.sponsorship | Mikel Egana Aranguren is funded by the Marie Curie Cofund programme (FP7) of the European Union and the Genomic Resources Group of the University of Basque Country. Alejandro Rodriguez Gonzalez and Mark D. Wilkinson are funded by the Isaac Peral Programme of the CBGP-UPM. | es |
| dc.language.iso | eng | es |
| dc.publisher | Biomed Central | es |
| dc.rights | info:eu-repo/semantics/openAccess | es |
| dc.subject | galaxy | es |
| dc.subject | web services | es |
| dc.subject | SADI | es |
| dc.subject | RDF | es |
| dc.subject | SPARQL | es |
| dc.subject | OWL | es |
| dc.subject | life sciences | es |
| dc.subject | genes | es |
| dc.title | Executing SADI services in Galaxy | es |
| dc.type | info:eu-repo/semantics/article | es |
| dc.rights.holder | © 2014 Egaña Aranguren et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the
Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use,
distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public
Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this
article, unless otherwise stated. | es |
| dc.relation.publisherversion | http://www.jbiomedsem.com/content/5/1/42/abstract | es |
| dc.identifier.doi | 10.1186/2041-1480-5-42 | |
| dc.departamentoes | Genética, antropología física y fisiología animal | es_ES |
| dc.departamentoeu | Genetika,antropologia fisikoa eta animalien fisiologia | es_ES |
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